Mercurial > repos > iracooke > xtandem
changeset 14:ca2c12070e89 draft
Uploaded
author | iracooke |
---|---|
date | Fri, 13 Jun 2014 02:56:19 -0400 |
parents | 2826f4b12b0b |
children | b81c47c81e0a |
files | tandem_to_pepxml.xml |
diffstat | 1 files changed, 29 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tandem_to_pepxml.xml Fri Jun 13 02:56:19 2014 -0400 @@ -0,0 +1,29 @@ +<tool id="tandem_to_pepxml_1" name="Tandem to pepXML" version="1.0.1"> + <requirements> + <requirement type="package" version="1.2.7">protk</requirement> + <requirement type="package" version="4.6.3">trans_proteomic_pipeline</requirement> + </requirements> + + <description>Converts a tandem result file to pepXML</description> + +<command>tandem_to_pepxml.rb + $input_file + + -o $output + +</command> +<inputs> + + + <param name="input_file" type="data" format="tandem" multiple="false" label="Input File" help="X!Tandem results file"/> + +</inputs> +<outputs> + <data format="raw_pepxml" metadata_source="input_file" name="output" label="${input_file.display_name}.pepXML" /> +</outputs> + +<help> + Convert X!Tandem results to pepXML +</help> + +</tool>