# HG changeset patch
# User iracooke
# Date 1402642579 14400
# Node ID ca2c12070e89d1dbb900828ad6abce89ccb2ddcc
# Parent  2826f4b12b0bb61a00db0ad0cb873b11fd8da57e
Uploaded

diff -r 2826f4b12b0b -r ca2c12070e89 tandem_to_pepxml.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tandem_to_pepxml.xml	Fri Jun 13 02:56:19 2014 -0400
@@ -0,0 +1,29 @@
+<tool id="tandem_to_pepxml_1" name="Tandem to pepXML" version="1.0.1">
+	<requirements>
+	    <requirement type="package" version="1.2.7">protk</requirement>
+	    <requirement type="package" version="4.6.3">trans_proteomic_pipeline</requirement>
+   </requirements>
+
+  <description>Converts a tandem result file to pepXML</description>
+
+<command>tandem_to_pepxml.rb 
+	$input_file 
+
+	-o $output 
+
+</command>
+<inputs>
+
+
+	<param name="input_file" type="data" format="tandem" multiple="false" label="Input File" help="X!Tandem results file"/>
+
+</inputs>
+<outputs>
+	<data format="raw_pepxml" metadata_source="input_file" name="output" label="${input_file.display_name}.pepXML" />
+</outputs>
+
+<help>
+	Convert X!Tandem results to pepXML
+</help>
+
+</tool>