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6
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1 {
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2 "a_galaxy_workflow": "true",
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3 "annotation": "{\"refinery_type\": \"analysis\"}",
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4 "format-version": "0.1",
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5 "name": "Test workflow: 5 steps without branching",
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6 "steps": {
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7 "0": {
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8 "annotation": "",
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9 "id": 0,
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10 "input_connections": {},
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11 "inputs": [
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12 {
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13 "description": "",
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14 "name": "Input Dataset"
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15 }
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16 ],
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17 "name": "Input dataset",
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18 "outputs": [],
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19 "position": {
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20 "left": 200,
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21 "top": 270
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22 },
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23 "tool_errors": null,
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24 "tool_id": null,
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25 "tool_state": "{\"name\": \"Input Dataset\"}",
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26 "tool_version": null,
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27 "type": "data_input",
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28 "user_outputs": []
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29 },
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30 "1": {
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31 "annotation": "",
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32 "id": 1,
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33 "input_connections": {
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34 "input_file": {
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35 "id": 0,
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36 "output_name": "output"
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37 }
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38 },
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39 "inputs": [],
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40 "name": "Refinery test tool 1-1",
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41 "outputs": [
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42 {
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43 "name": "output_file",
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44 "type": "txt"
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45 }
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46 ],
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47 "position": {
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48 "left": 404,
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49 "top": 248
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50 },
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51 "post_job_actions": {},
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52 "tool_errors": null,
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53 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1",
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54 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}",
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55 "tool_version": "0.1",
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56 "type": "tool",
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57 "user_outputs": []
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58 },
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59 "2": {
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60 "annotation": "",
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61 "id": 2,
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62 "input_connections": {
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63 "input_file": {
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64 "id": 1,
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65 "output_name": "output_file"
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66 }
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67 },
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68 "inputs": [],
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69 "name": "Refinery test tool 1-1",
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70 "outputs": [
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71 {
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72 "name": "output_file",
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73 "type": "txt"
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74 }
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75 ],
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76 "position": {
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77 "left": 623,
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78 "top": 251
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79 },
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80 "post_job_actions": {},
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81 "tool_errors": null,
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82 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1",
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83 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}",
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84 "tool_version": "0.1",
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85 "type": "tool",
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86 "user_outputs": []
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87 },
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88 "3": {
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89 "annotation": "",
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90 "id": 3,
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91 "input_connections": {
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92 "input_file": {
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93 "id": 2,
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94 "output_name": "output_file"
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95 }
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96 },
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97 "inputs": [],
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98 "name": "Refinery test tool 1-1",
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99 "outputs": [
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100 {
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101 "name": "output_file",
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102 "type": "txt"
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103 }
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104 ],
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105 "position": {
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106 "left": 841,
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107 "top": 252
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108 },
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109 "post_job_actions": {},
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110 "tool_errors": null,
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111 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1",
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112 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}",
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113 "tool_version": "0.1",
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114 "type": "tool",
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115 "user_outputs": []
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116 },
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117 "4": {
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118 "annotation": "",
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119 "id": 4,
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120 "input_connections": {
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121 "input_file": {
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122 "id": 3,
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123 "output_name": "output_file"
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124 }
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125 },
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126 "inputs": [],
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127 "name": "Refinery test tool 1-1",
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128 "outputs": [
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129 {
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130 "name": "output_file",
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131 "type": "txt"
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132 }
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133 ],
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134 "position": {
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135 "left": 1053,
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136 "top": 254
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137 },
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138 "post_job_actions": {},
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139 "tool_errors": null,
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140 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1",
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141 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}",
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142 "tool_version": "0.1",
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143 "type": "tool",
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144 "user_outputs": []
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145 },
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146 "5": {
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147 "annotation": "{\"output_file\": {\"name\":\"test tool out\", \"description\":\"\", \"type\":\"txt\"}}",
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148 "id": 5,
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149 "input_connections": {
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150 "input_file": {
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151 "id": 4,
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152 "output_name": "output_file"
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153 }
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154 },
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155 "inputs": [],
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156 "name": "Refinery test tool 1-1",
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157 "outputs": [
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158 {
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159 "name": "output_file",
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160 "type": "txt"
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161 }
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162 ],
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163 "position": {
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164 "left": 1271,
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165 "top": 257
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166 },
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167 "post_job_actions": {},
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168 "tool_errors": null,
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169 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1",
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170 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}",
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171 "tool_version": "0.1",
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172 "type": "tool",
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173 "user_outputs": []
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174 }
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175 }
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176 } |
