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view Test_workflow__5_steps_without_branching.ga @ 10:ca9a5aa3a59a draft default tip

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Update sample workflows to provide empty output file option.
author hackdna
date Mon, 13 May 2013 18:27:37 -0400
parents b72564825e0c
children
line wrap: on
line source

{
    "a_galaxy_workflow": "true", 
    "annotation": "{\"refinery_type\": \"analysis\"}", 
    "format-version": "0.1", 
    "name": "Test workflow: 5 steps without branching", 
    "steps": {
        "0": {
            "annotation": "", 
            "id": 0, 
            "input_connections": {}, 
            "inputs": [
                {
                    "description": "", 
                    "name": "Input Dataset"
                }
            ], 
            "name": "Input dataset", 
            "outputs": [], 
            "position": {
                "left": 200, 
                "top": 270
            }, 
            "tool_errors": null, 
            "tool_id": null, 
            "tool_state": "{\"name\": \"Input Dataset\"}", 
            "tool_version": null, 
            "type": "data_input", 
            "user_outputs": []
        }, 
        "1": {
            "annotation": "", 
            "id": 1, 
            "input_connections": {
                "input_file": {
                    "id": 0, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Refinery test tool 1-1", 
            "outputs": [
                {
                    "name": "output_file", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 404, 
                "top": 248
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", 
            "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", 
            "tool_version": "0.1", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "2": {
            "annotation": "", 
            "id": 2, 
            "input_connections": {
                "input_file": {
                    "id": 1, 
                    "output_name": "output_file"
                }
            }, 
            "inputs": [], 
            "name": "Refinery test tool 1-1", 
            "outputs": [
                {
                    "name": "output_file", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 623, 
                "top": 251
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", 
            "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", 
            "tool_version": "0.1", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "3": {
            "annotation": "", 
            "id": 3, 
            "input_connections": {
                "input_file": {
                    "id": 2, 
                    "output_name": "output_file"
                }
            }, 
            "inputs": [], 
            "name": "Refinery test tool 1-1", 
            "outputs": [
                {
                    "name": "output_file", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 841, 
                "top": 252
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", 
            "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", 
            "tool_version": "0.1", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "4": {
            "annotation": "", 
            "id": 4, 
            "input_connections": {
                "input_file": {
                    "id": 3, 
                    "output_name": "output_file"
                }
            }, 
            "inputs": [], 
            "name": "Refinery test tool 1-1", 
            "outputs": [
                {
                    "name": "output_file", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 1053, 
                "top": 254
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", 
            "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", 
            "tool_version": "0.1", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "5": {
            "annotation": "{\"output_file\": {\"name\":\"test tool out\", \"description\":\"\", \"type\":\"txt\"}}", 
            "id": 5, 
            "input_connections": {
                "input_file": {
                    "id": 4, 
                    "output_name": "output_file"
                }
            }, 
            "inputs": [], 
            "name": "Refinery test tool 1-1", 
            "outputs": [
                {
                    "name": "output_file", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 1271, 
                "top": 257
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", 
            "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", 
            "tool_version": "0.1", 
            "type": "tool", 
            "user_outputs": []
        }
    }
}