Mercurial > repos > greg > plant_tribes_assembly_post_processor
changeset 25:f180247fab16 draft
Uploaded
| author | greg |
|---|---|
| date | Wed, 30 Nov 2016 10:43:19 -0500 |
| parents | 128647761869 |
| children | d9de60b241b5 |
| files | plant_tribes_assembly_post_processor.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/plant_tribes_assembly_post_processor.xml Wed Nov 30 09:19:18 2016 -0500 +++ b/plant_tribes_assembly_post_processor.xml Wed Nov 30 10:43:19 2016 -0500 @@ -45,8 +45,7 @@ </param> <when value="transdecoder" /> <when value="estscan"> - <!-- TODO: this may require support for a new "smat" datatype --> - <param name="score_matrices" format="tabular" type="data" label="Scores matrices which reflect the codons preferences in the studied organisms"/> + <param name="score_matrices" format="smat" type="data" label="Scores matrices"/> </when> </conditional> <conditional name="options_type"> @@ -121,6 +120,7 @@ **Options** * **Prediction method for coding regions** - The prediction method for coding regions; one of ESTScan or TransDecoder. + * **Scores matrices** - Scores matrices that reflect the codons preferences in the studied organisms. * **Target gene family assembly?** - Select yes to target gene families to assemble. * **List of orthogroup identifiers for target gene families to assemble** - History item with a list of orthogroup identifiers for target gene families to assemble. The next version of this tool will use a dynamic select list for this feature. * **Orthogroups or gene families proteins scaffold** - PlantTribes scaffolds data.