Mercurial > repos > greg > plant_tribes_assembly_post_processor

changeset 26:d9de60b241b5 draft

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Uploaded
author greg
date Wed, 30 Nov 2016 10:58:34 -0500
parents f180247fab16
children 25278c308041
files plant_tribes_assembly_post_processor.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/plant_tribes_assembly_post_processor.xml	Wed Nov 30 10:43:19 2016 -0500
+++ b/plant_tribes_assembly_post_processor.xml	Wed Nov 30 10:58:34 2016 -0500
@@ -24,7 +24,7 @@
                     --scaffold "$options_type.target_gene_family_assembly_cond.scaffold"
                     --method "$options_type.target_gene_family_assembly_cond.method"
                 #end if
-                --gap_trimming $options_type.target_gene_family_assembly_cond.gap_trimming
+                --gap_trimming $options_type.gap_trimming
                 #if str($options_type.strand_specific) == 'yes':
                     --strand_specific
                 #end if
@@ -72,9 +72,9 @@
                             <option value="orthofinder">OrthoFinder</option>
                             <option value="orthomcl">OrthoMCL</option>
                         </param>
-                        <param name="gap_trimming" type="float" value="0.1" min="0" max="1.0" label="Remove gappy sites in alignments" help="0.1 removes sites with 90% gaps"/>
                     </when>
                 </conditional>
+                <param name="gap_trimming" type="float" value="0.1" min="0" max="1.0" label="Remove gappy sites in alignments" help="0.1 removes sites with 90% gaps"/>
                 <param name="strand_specific" type="select" label="De novo transcriptome assembly was performed with strand-specific library?">
                     <option value="no" selected="true">No</option>
                     <option value="yes">Yes</option>