# HG changeset patch
# User greg
# Date 1480520599 18000
# Node ID f180247fab16d68c69c7619b236d94bfad68f123
# Parent  1286477618696daebea1ef730f68c570ea4d3599
Uploaded

diff -r 128647761869 -r f180247fab16 plant_tribes_assembly_post_processor.xml
--- a/plant_tribes_assembly_post_processor.xml	Wed Nov 30 09:19:18 2016 -0500
+++ b/plant_tribes_assembly_post_processor.xml	Wed Nov 30 10:43:19 2016 -0500
@@ -45,8 +45,7 @@
             </param>
             <when value="transdecoder" />
             <when value="estscan">
-                <!-- TODO: this may require support for a new "smat" datatype -->
-                <param name="score_matrices" format="tabular" type="data" label="Scores matrices which reflect the codons preferences in the studied organisms"/>
+                <param name="score_matrices" format="smat" type="data" label="Scores matrices"/>
             </when>
         </conditional>
         <conditional name="options_type">
@@ -121,6 +120,7 @@
 **Options**
 
  * **Prediction method for coding regions** - The prediction method for coding regions; one of ESTScan or TransDecoder.
+ * **Scores matrices** - Scores matrices that reflect the codons preferences in the studied organisms.
  * **Target gene family assembly?** - Select yes to target gene families to assemble.
  * **List of orthogroup identifiers for target gene families to assemble** - History item with a list of orthogroup identifiers for target gene families to assemble.  The next version of this tool will use a dynamic select list for this feature.
  * **Orthogroups or gene families proteins scaffold** - PlantTribes scaffolds data.