Mercurial > repos > greg > plant_tribes_assembly_post_processor

changeset 4:e5809ed8e0aa draft

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Uploaded
author greg
date Mon, 28 Nov 2016 10:54:22 -0500
parents 06c1462f94e6
children fc6ecab8e007
files plant_tribes_assembly_post_processor.xml
diffstat 1 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/plant_tribes_assembly_post_processor.xml	Mon Nov 14 14:42:33 2016 -0500
+++ b/plant_tribes_assembly_post_processor.xml	Mon Nov 28 10:54:22 2016 -0500
@@ -1,4 +1,4 @@
-<tool id="plant_tribes_assembly_post_processor" name="Plant Tribes Assembly Post Processor" version="1.0.0">
+<tool id="plant_tribes_assembly_post_processor" name="PlantTribes Assembly Post Processor" version="1.0.0">
     <description></description>
     <requirements>
         <requirement type="package" version="0.1">plant_tribes_assembly_post_processor</requirement>
@@ -62,9 +62,10 @@
                     </param>
                     <when value="no" />
                     <when value="yes">
-                        <param format="tabular" name="orthogroups" type="data" label="Targeted gene families (orthogroups)"/>
-                        <!-- TODO: This needs to be a scaffold file, like 22Gv1.0, 22Gv1.1, etc.  This will likely require a new datatype,
-                        but to get this to work for now I'll just use the supported fasta datatype. -->
+                        <param name="orthogroups" type="select" label="Targeted gene families (orthogroups)">
+                            <options from_data_table="plant_tribes_scaffolds" />
+                            <validator type="no_options" message="No PlantTribes scaffolds are available.  Use the PlantTribes Scaffolds Download Data Manager tool to install and populate the PlantTribes scaffolds data table."/>
+                        </param>
                         <param format="fasta" name="scaffold" type="data" label="Orthogroups or gene families proteins scaffold"/>
                         <param name="method" type="select" label="Protein clustering method">
                             <option value="gfam" selected="true">GFam</option>