Mercurial > repos > greg > plant_tribes_assembly_post_processor

changeset 7:b1b7e7244c55 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Mon, 28 Nov 2016 12:47:49 -0500
parents dca3ecd0c123
children 8d2d7b55083d
files plant_tribes_assembly_post_processor.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/plant_tribes_assembly_post_processor.xml	Mon Nov 28 10:59:22 2016 -0500
+++ b/plant_tribes_assembly_post_processor.xml	Mon Nov 28 12:47:49 2016 -0500
@@ -62,11 +62,12 @@
                     </param>
                     <when value="no" />
                     <when value="yes">
-                        <param name="orthogroups" type="select" label="Targeted gene families (orthogroups)">
+                        <!-- TODO: this may require support for a new "smat" datatype -->
+                        <param name="orthogroups" format="tabular" type="data" label="List of orthogroup identifiers for target gene families to assemble"/>
+                        <param name="scaffold" type="select" label="Orthogroups or gene families proteins scaffold">
                             <options from_data_table="plant_tribes_scaffolds" />
                             <validator type="no_options" message="No PlantTribes scaffolds are available.  Use the PlantTribes Scaffolds Download Data Manager tool to install and populate the PlantTribes scaffolds data table."/>
                         </param>
-                        <param format="fasta" name="scaffold" type="data" label="Orthogroups or gene families proteins scaffold"/>
                         <param name="method" type="select" label="Protein clustering method">
                             <option value="gfam" selected="true">GFam</option>
                             <option value="orthofinder">OrthoFinder</option>