# HG changeset patch
# User greg
# Date 1480355269 18000
# Node ID b1b7e7244c55f9c0e34c62000cb1cc63b09682aa
# Parent  dca3ecd0c123ac814314408067b4ff49e19e3eb5
Uploaded

diff -r dca3ecd0c123 -r b1b7e7244c55 plant_tribes_assembly_post_processor.xml
--- a/plant_tribes_assembly_post_processor.xml	Mon Nov 28 10:59:22 2016 -0500
+++ b/plant_tribes_assembly_post_processor.xml	Mon Nov 28 12:47:49 2016 -0500
@@ -62,11 +62,12 @@
                     </param>
                     <when value="no" />
                     <when value="yes">
-                        <param name="orthogroups" type="select" label="Targeted gene families (orthogroups)">
+                        <!-- TODO: this may require support for a new "smat" datatype -->
+                        <param name="orthogroups" format="tabular" type="data" label="List of orthogroup identifiers for target gene families to assemble"/>
+                        <param name="scaffold" type="select" label="Orthogroups or gene families proteins scaffold">
                             <options from_data_table="plant_tribes_scaffolds" />
                             <validator type="no_options" message="No PlantTribes scaffolds are available.  Use the PlantTribes Scaffolds Download Data Manager tool to install and populate the PlantTribes scaffolds data table."/>
                         </param>
-                        <param format="fasta" name="scaffold" type="data" label="Orthogroups or gene families proteins scaffold"/>
                         <param name="method" type="select" label="Protein clustering method">
                             <option value="gfam" selected="true">GFam</option>
                             <option value="orthofinder">OrthoFinder</option>