Mercurial > repos > greg > phylogenomics_analysis
changeset 27:ce6108b3063b draft
Uploaded
| author | greg |
|---|---|
| date | Tue, 10 Jan 2017 12:21:47 -0500 |
| parents | e19872abae29 |
| children | a401feff8354 |
| files | phylogenomics_analysis.xml |
| diffstat | 1 files changed, 8 insertions(+), 1 deletions(-) [+] |
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--- a/phylogenomics_analysis.xml Tue Jan 10 09:51:27 2017 -0500 +++ b/phylogenomics_analysis.xml Tue Jan 10 12:21:47 2017 -0500 @@ -64,6 +64,13 @@ #if str($options_type.multiple_sequence_alignments_cond.multiple_sequence_alignments) == 'yes': #set multiple_sequence_alignments_option_cond = $options_type.multiple_sequence_alignments_cond.multiple_sequence_alignments_option_cond #set multiple_sequence_alignments_option = $multiple_sequence_alignments_option_cond.multiple_sequence_alignments_option + #if str($multiple_sequence_alignments_option) == 'create_alignments': + #set multiple_sequence_alignments_option_str = 'Create alignments (MAFFT algorithm)' + #else if str($multiple_sequence_alignments_option) == 'add_alignments': + #set multiple_sequence_alignments_option_str = 'Add proteins to alignments (MAFFT algorithm)' + #else if str($multiple_sequence_alignments_option) == 'pasta_alignments': + #set multiple_sequence_alignments_option_str = 'Create alignments (PASTA algorithm)' + #end if #set input_includes_coding_sequences_cond = $options_type.multiple_sequence_alignments_cond.input_includes_coding_sequences_cond #set input_includes_coding_sequences = $input_includes_coding_sequences_cond.input_includes_coding_sequences #if str($input_includes_coding_sequences) == 'yes': @@ -276,7 +283,7 @@ </inputs> <outputs> <data name="output_fasta" format="txt" label="Sequence alignments and corresponding phylogenies on ${on_string}"/> - <data name="output_aln" format="txt" label="Sequence alignments and corresponding phylogenies using PASTA on ${on_string}"> + <data name="output_aln" format="txt" label="Multiple sequence alignments using method '${multiple_sequence_alignments_option_str}' on ${on_string}"> <filter>options_type['options_type_selector'] == 'advanced' and options_type['multiple_sequence_alignments_cond']['multiple_sequence_alignments'] == 'yes'</filter> </data> <data name="output_tree" format="txt" label="Phylogenetic trees on ${on_string}">