Mercurial > repos > greg > phylogenomics_analysis
changeset 26:e19872abae29 draft
Uploaded
| author | greg |
|---|---|
| date | Tue, 10 Jan 2017 09:51:27 -0500 |
| parents | 61c90d75c7cd |
| children | ce6108b3063b |
| files | phylogenomics_analysis.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/phylogenomics_analysis.xml Sat Jan 07 10:09:32 2017 -0500 +++ b/phylogenomics_analysis.xml Tue Jan 10 09:51:27 2017 -0500 @@ -118,7 +118,7 @@ --remove_sequences $remove_gappy_sequences_cond.remove_sequences #if str($trim_type_cond.trim_type) == 'automated_trimming': --automated_trimming - else: + #else: --gap_trimming $trim_type_cond.gap_trimming #end if #end if @@ -259,8 +259,8 @@ <param name="remove_sequences" type="float" value="0.5" min="0" max="1" label="Remove sequences with gaps of" help="0.5 removes sequences with 50% gaps"/> <conditional name="trim_type_cond"> <param name="trim_type" type="select" label="Select process used for gap trimming"> - <option value="automated_trimming" selected="true">Trim alignments using trimAl's ML heuristic trimming approach</option> - <option value="gap_trimming">Nucleotide based</option> + <option value="gap_trimming" selected="true">Nucleotide based</option> + <option value="automated_trimming">Trim alignments using trimAl's ML heuristic trimming approach</option> </param> <when value="automated_trimming"/> <when value="gap_trimming">