# HG changeset patch
# User greg
# Date 1484068907 18000
# Node ID ce6108b3063b7369595419c32d99ce879674e723
# Parent  e19872abae29ea048152aa7d2080de2677cc947e
Uploaded

diff -r e19872abae29 -r ce6108b3063b phylogenomics_analysis.xml
--- a/phylogenomics_analysis.xml	Tue Jan 10 09:51:27 2017 -0500
+++ b/phylogenomics_analysis.xml	Tue Jan 10 12:21:47 2017 -0500
@@ -64,6 +64,13 @@
                 #if str($options_type.multiple_sequence_alignments_cond.multiple_sequence_alignments) == 'yes':
                     #set multiple_sequence_alignments_option_cond = $options_type.multiple_sequence_alignments_cond.multiple_sequence_alignments_option_cond
                     #set multiple_sequence_alignments_option = $multiple_sequence_alignments_option_cond.multiple_sequence_alignments_option
+                    #if str($multiple_sequence_alignments_option) == 'create_alignments':
+                        #set multiple_sequence_alignments_option_str = 'Create alignments (MAFFT algorithm)'
+                    #else if str($multiple_sequence_alignments_option) == 'add_alignments':
+                        #set multiple_sequence_alignments_option_str = 'Add proteins to alignments (MAFFT algorithm)'
+                    #else if str($multiple_sequence_alignments_option) == 'pasta_alignments':
+                        #set multiple_sequence_alignments_option_str = 'Create alignments (PASTA algorithm)'
+                    #end if
                     #set input_includes_coding_sequences_cond = $options_type.multiple_sequence_alignments_cond.input_includes_coding_sequences_cond
                     #set input_includes_coding_sequences = $input_includes_coding_sequences_cond.input_includes_coding_sequences
                     #if str($input_includes_coding_sequences) == 'yes':
@@ -276,7 +283,7 @@
     </inputs>
     <outputs>
         <data name="output_fasta" format="txt" label="Sequence alignments and corresponding phylogenies on ${on_string}"/>
-        <data name="output_aln" format="txt" label="Sequence alignments and corresponding phylogenies using PASTA on ${on_string}">
+        <data name="output_aln" format="txt" label="Multiple sequence alignments using method '${multiple_sequence_alignments_option_str}' on ${on_string}">
             <filter>options_type['options_type_selector'] == 'advanced' and options_type['multiple_sequence_alignments_cond']['multiple_sequence_alignments'] == 'yes'</filter>
         </data>
         <data name="output_tree" format="txt" label="Phylogenetic trees on ${on_string}">