Mercurial > repos > greg > phylogenomics_analysis
changeset 62:785eef1c4700 draft
Uploaded
| author | greg |
|---|---|
| date | Thu, 16 Feb 2017 10:17:48 -0500 |
| parents | bf5cfbf2cfbc |
| children | c2d2ca6cf94b |
| files | phylogenomics_analysis.xml |
| diffstat | 1 files changed, 5 insertions(+), 11 deletions(-) [+] |
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--- a/phylogenomics_analysis.xml Thu Feb 16 10:14:17 2017 -0500 +++ b/phylogenomics_analysis.xml Thu Feb 16 10:17:48 2017 -0500 @@ -131,24 +131,18 @@ && echo -e "#Size\tName" > $output_fasta_ptorthocs && ls -l $src_fasta_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_fasta_ptorthocs #end if - #if len($os.listdir($src_fasta_dir)) > 0: - && mv $src_fasta_dir/* $dest_fasta_dir - #end if + && mv $src_fasta_dir/* $dest_fasta_dir #if $generate_output_aln: && echo -e "#Size\tName" > $output_aln - #if len($os.listdir($src_aln_dir)) > 0: - ls -l $src_aln_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_aln - && mv $src_aln_dir/* $dest_aln_dir - #end if + && ls -l $src_aln_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_aln + && mv $src_aln_dir/* $dest_aln_dir #end if #if $generate_output_tree: && echo -e "#Size\tName" > $output_tree - #if len($os.listdir($src_tree_dir)) > 0: - && ls -l $src_tree_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_tree - && mv $src_tree_dir/* $dest_tree_dir - #end if + && ls -l $src_tree_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_tree + && mv $src_tree_dir/* $dest_tree_dir #end if ]]> </command>