# HG changeset patch
# User greg
# Date 1487258268 18000
# Node ID 785eef1c4700c58f233ef9f030b0f94a4655ec6d
# Parent  bf5cfbf2cfbc37274fa82125d2d9d88692cf252e
Uploaded

diff -r bf5cfbf2cfbc -r 785eef1c4700 phylogenomics_analysis.xml
--- a/phylogenomics_analysis.xml	Thu Feb 16 10:14:17 2017 -0500
+++ b/phylogenomics_analysis.xml	Thu Feb 16 10:17:48 2017 -0500
@@ -131,24 +131,18 @@
                 && echo -e "#Size\tName" > $output_fasta_ptorthocs
                 && ls -l $src_fasta_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_fasta_ptorthocs
             #end if
-            #if len($os.listdir($src_fasta_dir)) > 0:
-                && mv $src_fasta_dir/* $dest_fasta_dir
-            #end if
+            && mv $src_fasta_dir/* $dest_fasta_dir
 
             #if $generate_output_aln:
                 && echo -e "#Size\tName" > $output_aln
-                #if len($os.listdir($src_aln_dir)) > 0:
-                     ls -l $src_aln_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_aln
-                    && mv $src_aln_dir/* $dest_aln_dir
-                #end if
+                && ls -l $src_aln_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_aln
+                && mv $src_aln_dir/* $dest_aln_dir
             #end if
 
             #if $generate_output_tree:
                 && echo -e "#Size\tName" > $output_tree
-                #if len($os.listdir($src_tree_dir)) > 0:
-                    && ls -l $src_tree_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_tree
-                    && mv $src_tree_dir/* $dest_tree_dir
-                #end if
+                && ls -l $src_tree_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_tree
+                && mv $src_tree_dir/* $dest_tree_dir
             #end if
         ]]>
     </command>