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changeset 94:467fb23ee966 draft

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Uploaded
author greg
date Thu, 23 Mar 2017 08:58:16 -0400
parents 3f8cbca74ec4
children 19a961b1cffa
files macros.xml
diffstat 1 files changed, 7 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Thu Mar 23 08:56:32 2017 -0400
+++ b/macros.xml	Thu Mar 23 08:58:16 2017 -0400
@@ -67,19 +67,20 @@
             <option value="yes">Yes</option>
         </param>
     </xml>
+    <xml name="options_multiple_sequence_alignments_option">
+        <option value="create_alignments">Create orthogroup protein multiple sequence alignments including scaffold backbone proteins (MAFFT algorithm)</option>
+        <option value="add_alignments">Add unaligned orthogroup proteins to scaffold backbone multiple sequence alignments (MAFFT algorithm)</option>
+        <option value="pasta_alignments">Create orthogroup protein multiple sequence alignments including scaffold backbone proteins (PASTA algorithm)</option>
+    </xml>
     <xml name="param_multiple_sequence_alignments_option">
         <param name="multiple_sequence_alignments_option" type="select" force_select="true" label="Select method for multiple sequence alignments">
-            <option value="create_alignments">Create orthogroup protein multiple sequence alignments including scaffold backbone proteins (MAFFT algorithm)</option>
-            <option value="add_alignments">Add unaligned orthogroup proteins to scaffold backbone multiple sequence alignments (MAFFT algorithm)</option>
-            <option value="pasta_alignments">Create orthogroup protein multiple sequence alignments including scaffold backbone proteins (PASTA algorithm)</option>
+            <expand macro="options_multiple_sequence_alignments_option" />
         </param>
     </xml>
     <xml name="cond_multiple_sequence_alignments_option_with_iterative_realignments">
         <conditional name="multiple_sequence_alignments_option_cond">
             <param name="multiple_sequence_alignments_option" type="select" force_select="true" label="Select method for multiple sequence alignments">
-                <option value="create_alignments">Create orthogroup protein multiple sequence alignments including scaffold backbone proteins (MAFFT algorithm)</option>
-                <option value="add_alignments">Add unaligned orthogroup proteins to scaffold backbone multiple sequence alignments (MAFFT algorithm)</option>
-                <option value="pasta_alignments">Create orthogroup protein multiple sequence alignments including scaffold backbone proteins (PASTA algorithm)</option>
+                <expand macro="options_multiple_sequence_alignments_option" />
                 <option value="iterative_realignments">Iterative orthogroups realignment, trimming and fitering</option>
             </param>
             <expand macro="whens_multiple_sequence_alignments_option_cond" />