changeset 9:cf847e9f1a3a draft

Uploaded

--- a/dmri.py	Fri Nov 03 13:33:58 2017 -0400
+++ b/dmri.py	Fri Nov 03 13:42:38 2017 -0400
@@ -12,29 +12,12 @@
 
 args = parser.parse_args()
 
-def move_directory_files(source_dir, destination_dir, copy=False, remove_source_dir=False):
-    source_directory = os.path.abspath(source_dir)
-    destination_directory = os.path.abspath(destination_dir)
-    if not os.path.isdir(destination_directory):
-        os.makedirs(destination_directory)
-    for dir_entry in os.listdir(source_directory):
-        source_entry = os.path.join(source_directory, dir_entry)
-        if copy:
-            shutil.copy(source_entry, destination_directory)
-        else:
-            shutil.move(source_entry, destination_directory)
-    if remove_source_dir:
-        os.rmdir(source_directory)
-source_dir = os.path.abspath(os.path.join('home', 'greg', '.dipy', 'sherbrooke_3shell'))
-dest_dir = 'input_dir'
-if not os.path.exists(source_dir):
-    # Get input data.
-    fetch_sherbrooke_3shell()
-# Move inputs to working directory.
-move_directory_files(source_dir, dest_dir, copy=True)
-fdwi = os.path.join(dest_dir, 'HARDI193.nii.gz')
-fbval = os.path.join(dest_dir, 'HARDI193.bval')
-fbvec = os.path.join(dest_dir, 'HARDI193.bvec')
+input_dir = os.path.join('.dipy', 'sherbrooke_3shell')
+# Get input data.
+fetch_sherbrooke_3shell()
+fdwi = os.path.join(input_dir, 'HARDI193.nii.gz')
+fbval = os.path.join(input_dir, 'HARDI193.bval')
+fbvec = os.path.join(input_dir, 'HARDI193.bvec')
 # Load the dMRI datasets.
 img = nibabel.load(fdwi)
 data = img.get_data()