Mercurial > repos > greg > assembly_post_processor

changeset 11:ef522c398ad4 draft

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Uploaded
author greg
date Tue, 31 Jan 2017 13:42:13 -0500
parents db0c2baf176f
children 622603f41432
files assembly_post_processor.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/assembly_post_processor.xml	Tue Jan 31 13:34:49 2017 -0500
+++ b/assembly_post_processor.xml	Tue Jan 31 13:42:13 2017 -0500
@@ -22,9 +22,9 @@
             #end if
             #if str($options_type.options_type_selector) == 'advanced':
                 #if str($options_type.target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes':
-                    #set scaffold_path = '$options_type.target_gene_family_assembly_cond.scaffold.path'
-                    #set scaffold_dir = os.path.split($scaffold_path)[0]
-                    #set scaffold = os.path.split($scaffold_path)[1]
+                    #set scaffold_path = $options_type.target_gene_family_assembly_cond.scaffold.path
+                    #set scaffold_dir = $os.path.split($scaffold_path)[0]
+                    #set scaffold = $os.path.split($scaffold_path)[1]
                     --gene_family_search '$options_type.target_gene_family_assembly_cond.orthogroups'
                     --scaffold_dir $scaffold_dir
                     --scaffold $scaffold