view uniq.xml @ 0:631dfde45073 draft default tip

First tool-shed public version

<tool id="cshl_uniq_tool" name="uniq" version="0.1.1">
  <description></description>
  <command>
	uniq -f $skipfields $count $repeated $ignorecase $uniqueonly $input1 &gt; $output
  </command>

  <inputs>
	<param format="txt" name="input1" type="data" label="File to scan for unique values" help="Make sure you have sorted this file" />
	<param name="count" type="boolean" label="count [-c]" help="Prefix lines by the number of occurrences" truevalue="-c" falsevalue="" />

	<param name="repeated" type="boolean" label="repeated [-d]" help="Only print duplicate lines" truevalue="-d" falsevalue="" />

	<param name="ignorecase" type="boolean" label="ignore case [-i]" help="Ignore differences in case when comparing" truevalue="-i" falsevalue="" />

	<param name="uniqueonly" type="boolean" label="unique only [-u]" help="Only print unique lines" truevalue="-u" falsevalue="" />

	<param name="skipfields" type="integer" label="skip fields [-f]" help="Avoid comparing the first N fields. (use zero to start from the first field)" size="2" value="0" />
  </inputs>

  <outputs>
    <data format="input" name="output" metadata_source="input1"
	/>
  </outputs>
  <help>
This tool takes a sorted file and look for lines that are unique.

.. class:: warningmark

Please make sure your file is sorted, or else this tool will give you an erroneous output.

.. class:: infomark

You can sort your file using either the "Sort" tool in "Filter and Sort", or the "Sort" tool in "Unix Tools".

  </help>
</tool>