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author gordon
date Tue, 09 Oct 2012 18:48:06 -0400
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1 <tool id="cshl_uniq_tool" name="uniq" version="0.1.1">
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2 <description></description>
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3 <command>
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4 uniq -f $skipfields $count $repeated $ignorecase $uniqueonly $input1 &gt; $output
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5 </command>
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6
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7 <inputs>
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8 <param format="txt" name="input1" type="data" label="File to scan for unique values" help="Make sure you have sorted this file" />
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9 <param name="count" type="boolean" label="count [-c]" help="Prefix lines by the number of occurrences" truevalue="-c" falsevalue="" />
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10
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11 <param name="repeated" type="boolean" label="repeated [-d]" help="Only print duplicate lines" truevalue="-d" falsevalue="" />
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13 <param name="ignorecase" type="boolean" label="ignore case [-i]" help="Ignore differences in case when comparing" truevalue="-i" falsevalue="" />
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14
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15 <param name="uniqueonly" type="boolean" label="unique only [-u]" help="Only print unique lines" truevalue="-u" falsevalue="" />
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16
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17 <param name="skipfields" type="integer" label="skip fields [-f]" help="Avoid comparing the first N fields. (use zero to start from the first field)" size="2" value="0" />
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18 </inputs>
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19
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20 <outputs>
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21 <data format="input" name="output" metadata_source="input1"
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22 />
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23 </outputs>
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24 <help>
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25 This tool takes a sorted file and look for lines that are unique.
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26
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27 .. class:: warningmark
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28
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29 Please make sure your file is sorted, or else this tool will give you an erroneous output.
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30
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31 .. class:: infomark
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32
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33 You can sort your file using either the "Sort" tool in "Filter and Sort", or the "Sort" tool in "Unix Tools".
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34
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35 </help>
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36 </tool>