Mercurial > repos > glogobyte > isoread

changeset 43:1c51f04fc951 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author glogobyte
date Mon, 06 Dec 2021 15:17:05 +0000
parents a1f3a63218cb
children 24839b38543d
files isoread.xml
diffstat 1 files changed, 2 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/isoread.xml	Sun Dec 05 13:37:51 2021 +0000
+++ b/isoread.xml	Mon Dec 06 15:17:05 2021 +0000
@@ -137,6 +137,8 @@
   hsa-let-7c-5p_nont_0_+2_AT    TGAGGTAGTAGGTTGTATGGTTAT        
   ============================= ========================
   
+  -----
+  
   **Outputs**
 
   As output, the tool produces tabular files with all the detected miRs and isomiRs per category for every SAM file as a database for the user and two types of count matrices containing the copy number of each entry. One of the count matrix types is compatible with the DESeq2 and EdgeR tools so that the user can continue with differential expression analysis. The other types of count matrices generated per miR category (RefSeq miRs, template isomiRs, and non-template isomiRs) and per group are enriched with read sequences. Apart from the tabular files, the tool produces a PDF report file with several custom graphs and statistical information about the isomiR profiles in the user data.