# HG changeset patch
# User glogobyte
# Date 1638803825 0
# Node ID 1c51f04fc951988506169b97c39b3393a508ce33
# Parent  a1f3a63218cb9d6c5dcf84d3b71f7693c7cd0713
Uploaded

diff -r a1f3a63218cb -r 1c51f04fc951 isoread.xml
--- a/isoread.xml	Sun Dec 05 13:37:51 2021 +0000
+++ b/isoread.xml	Mon Dec 06 15:17:05 2021 +0000
@@ -137,6 +137,8 @@
   hsa-let-7c-5p_nont_0_+2_AT    TGAGGTAGTAGGTTGTATGGTTAT        
   ============================= ========================
   
+  -----
+  
   **Outputs**
 
   As output, the tool produces tabular files with all the detected miRs and isomiRs per category for every SAM file as a database for the user and two types of count matrices containing the copy number of each entry. One of the count matrix types is compatible with the DESeq2 and EdgeR tools so that the user can continue with differential expression analysis. The other types of count matrices generated per miR category (RefSeq miRs, template isomiRs, and non-template isomiRs) and per group are enriched with read sequences. Apart from the tabular files, the tool produces a PDF report file with several custom graphs and statistical information about the isomiR profiles in the user data.