Mercurial > repos > gga > chado_expression_add_expression

annotate expression_add_expression.xml @ 2:5460dcfd4788 draft

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author gga
date Fri, 23 Nov 2018 10:48:58 -0500
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1 <?xml version="1.0"?>
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2 <tool id="expression_add_expression" name="Chado expression add" version="@WRAPPER_VERSION@.0">
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3 <description></description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <code file="chado.py"/>
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9 <command detect_errors="aggressive"><![CDATA[
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10 @AUTH@
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8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
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12 chakin expression add_expression
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13 '$organism_id'
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14 '$analysis_id'
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
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15 '$file_path'
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17 > $results
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18 ]]></command>
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19 <inputs>
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20 <!-- arguments -->
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21 <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" />
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
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22 <param argument="analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" />
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
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23 <param name="file_path" label="Expression matrix" argument="file_path" type="data" format="tabular" help="Tabular file where columns are experimental conditions, and rows are features" />
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24
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25 <expand macro="wait_for"/>
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26 </inputs>
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27 <outputs>
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28 <data format="txt" name="results"/>
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
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29 </outputs>
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30 <help>
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31 Add an expression matrix file to the database
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32
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
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33 @HELP@
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34 </help>
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35 </tool>