Mercurial > repos > gga > chado_expression_add_expression

comparison expression_add_expression.xml @ 2:5460dcfd4788 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
author gga
date Fri, 23 Nov 2018 10:48:58 -0500
parents 8df4c23198c1
children fa3094eaee87
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1:fdf259c5a285 2:5460dcfd4788
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="expression_add_expression" name="Chado expression add" version="@WRAPPER_VERSION@.0"> 2 <tool id="expression_add_expression" name="Chado expression add" version="@WRAPPER_VERSION@.0">
3 <description></description> 3 <description></description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <code file="chado.py"/> 8 <code file="chado.py"/>
9 <command detect_errors="aggressive"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 @AUTH@ 10 @AUTH@
11 11
12 chakin expression add_expression 12 chakin expression add_expression
13 '$organism_id' 13 '$organism_id'
14 '$analysis_id' 14 '$analysis_id'
15 '$file_path' 15 '$file_path'
16 16
17 > $results 17 > $results
18 ]]></command> 18 ]]></command>
19 <inputs> 19 <inputs>
20 <!-- arguments --> 20 <!-- arguments -->
21 <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" /> 21 <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" />
22 <param argument="analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" /> 22 <param argument="analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" />
23 <param name="file_path" label="Expression matrix" argument="file_path" type="data" format="tabular" help="Tabular file where columns are experimental conditions, and rows are features" /> 23 <param name="file_path" label="Expression matrix" argument="file_path" type="data" format="tabular" help="Tabular file where columns are experimental conditions, and rows are features" />
24 24
25 <expand macro="wait_for"/> 25 <expand macro="wait_for"/>
26 </inputs> 26 </inputs>
27 <outputs> 27 <outputs>
28 <data format="txt" name="results"/> 28 <data format="txt" name="results"/>
29 </outputs> 29 </outputs>
30 <help> 30 <help>
31 Add an expression matrix file to the database 31 Add an expression matrix file to the database
32 32
33 @HELP@ 33 @HELP@
34 </help> 34 </help>
35 </tool> 35 </tool>