Mercurial > repos > galaxyp > openms_topperc
changeset 4:b9752f4f40c8 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit d2b76821e22b13ed6e21795ac1b82446d8f594c6
| author | galaxyp |
|---|---|
| date | Fri, 18 Aug 2017 14:15:23 -0400 |
| parents | fcfb8f736502 |
| children | aca616a5e6b6 |
| files | TopPerc.xml macros.xml |
| diffstat | 2 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/TopPerc.xml Mon Aug 07 15:00:21 2017 -0400 +++ b/TopPerc.xml Fri Aug 18 14:15:23 2017 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Utilities]--> -<tool id="TopPerc" name="TopPerc" version="2.2.0"> +<tool id="TopPerc" name="TopPerc" version="2.2.0.1"> <description>Facilitate input to Percolator and reintegrate.</description> <macros> <token name="@EXECUTABLE@">TopPerc</token> @@ -160,7 +160,7 @@ #end if </command> <inputs> - <param name="param_percolator_executable" type="data" format="text" label="Path to the percolator binary" help="(-percolator_executable) "/> + <param name="param_percolator_executable" type="data" format="txt" label="Path to the percolator binary" help="(-percolator_executable) "/> <param name="param_in_target" type="data" format="mzid" optional="False" label="Input target file" help="(-in_target) "/> <param name="param_in_decoy" type="data" format="mzid" optional="False" label="Input decoy file" help="(-in_decoy) "/> <param name="param_enzyme" type="text" size="30" value="trypsin" label="Type of enzyme: no_enzyme,elastase,pepsin,proteinasek,thermolysin,chymotrypsin,lys-n,lys-c,arg-c,asp-n,glu-c,trypsin" help="(-enzyme) "> @@ -180,8 +180,8 @@ <param name="param_i" type="integer" value="0" label="Maximal number of iterations" help="(-i) "/> <param name="param_x" display="radio" type="boolean" truevalue="-x" falsevalue="" checked="false" optional="True" label="Quicker execution by reduced internal cross-validation" help="(-x) "/> <param name="param_f" type="float" value="0.6" label="Fraction of the negative data set to be used as train set when only providing one negative set, remaining examples will be used as test set" help="(-f) Set to 0.6 by default"/> - <param name="param_k" type="data" format="text" label="Input file given in the deprecated pin-xml format generated by" help="(-k) e.g. sqt2pin with the -k option"/> - <param name="param_W" type="data" format="text" label="Read initial weights to the given file" help="(-W) "/> + <param name="param_k" type="data" format="txt" label="Input file given in the deprecated pin-xml format generated by" help="(-k) e.g. sqt2pin with the -k option"/> + <param name="param_W" type="data" format="txt" label="Read initial weights to the given file" help="(-W) "/> <param name="param_V" type="text" size="30" label="The most informative feature given as the feature name, can be negated to indicate that a lower value is bette" help="(-V) "> <sanitizer> <valid initial="string.printable">
--- a/macros.xml Mon Aug 07 15:00:21 2017 -0400 +++ b/macros.xml Fri Aug 18 14:15:23 2017 -0400 @@ -6,6 +6,7 @@ <requirement type="package" version="15.12.15.2">xtandem</requirement> <requirement type="package" version="1.0">fido</requirement> <requirement type="package" version="2016.10.26">msgf_plus</requirement> + <yield/> </requirements> </xml> <xml name="stdio">