# HG changeset patch
# User galaxyp
# Date 1503080123 14400
# Node ID b9752f4f40c8eb760592759166ae80e0e6c5f567
# Parent  fcfb8f73650271af2386e76c7f26cef670bb5fd6
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit d2b76821e22b13ed6e21795ac1b82446d8f594c6

diff -r fcfb8f736502 -r b9752f4f40c8 TopPerc.xml
--- a/TopPerc.xml	Mon Aug 07 15:00:21 2017 -0400
+++ b/TopPerc.xml	Fri Aug 18 14:15:23 2017 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
 <!--Proposed Tool Section: [Utilities]-->
-<tool id="TopPerc" name="TopPerc" version="2.2.0">
+<tool id="TopPerc" name="TopPerc" version="2.2.0.1">
   <description>Facilitate input to Percolator and reintegrate.</description>
   <macros>
     <token name="@EXECUTABLE@">TopPerc</token>
@@ -160,7 +160,7 @@
 #end if
 </command>
   <inputs>
-    <param name="param_percolator_executable" type="data" format="text" label="Path to the percolator binary" help="(-percolator_executable) "/>
+    <param name="param_percolator_executable" type="data" format="txt" label="Path to the percolator binary" help="(-percolator_executable) "/>
     <param name="param_in_target" type="data" format="mzid" optional="False" label="Input target file" help="(-in_target) "/>
     <param name="param_in_decoy" type="data" format="mzid" optional="False" label="Input decoy file" help="(-in_decoy) "/>
     <param name="param_enzyme" type="text" size="30" value="trypsin" label="Type of enzyme: no_enzyme,elastase,pepsin,proteinasek,thermolysin,chymotrypsin,lys-n,lys-c,arg-c,asp-n,glu-c,trypsin" help="(-enzyme) ">
@@ -180,8 +180,8 @@
     <param name="param_i" type="integer" value="0" label="Maximal number of iterations" help="(-i) "/>
     <param name="param_x" display="radio" type="boolean" truevalue="-x" falsevalue="" checked="false" optional="True" label="Quicker execution by reduced internal cross-validation" help="(-x) "/>
     <param name="param_f" type="float" value="0.6" label="Fraction of the negative data set to be used as train set when only providing one negative set, remaining examples will be used as test set" help="(-f) Set to 0.6 by default"/>
-    <param name="param_k" type="data" format="text" label="Input file given in the deprecated pin-xml format generated by" help="(-k) e.g. sqt2pin with the -k option"/>
-    <param name="param_W" type="data" format="text" label="Read initial weights to the given file" help="(-W) "/>
+    <param name="param_k" type="data" format="txt" label="Input file given in the deprecated pin-xml format generated by" help="(-k) e.g. sqt2pin with the -k option"/>
+    <param name="param_W" type="data" format="txt" label="Read initial weights to the given file" help="(-W) "/>
     <param name="param_V" type="text" size="30" label="The most informative feature given as the feature name, can be negated to indicate that a lower value is bette" help="(-V) ">
       <sanitizer>
         <valid initial="string.printable">
diff -r fcfb8f736502 -r b9752f4f40c8 macros.xml
--- a/macros.xml	Mon Aug 07 15:00:21 2017 -0400
+++ b/macros.xml	Fri Aug 18 14:15:23 2017 -0400
@@ -6,6 +6,7 @@
       <requirement type="package" version="15.12.15.2">xtandem</requirement>
       <requirement type="package" version="1.0">fido</requirement>
       <requirement type="package" version="2016.10.26">msgf_plus</requirement>
+      <yield/>
     </requirements>
   </xml>
   <xml name="stdio">