Mercurial > repos > galaxyp > openms_fidoadapter
changeset 9:0245664f3b6d draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 26556c08813e892b4d1eed0e98012601870cae5f
| author | galaxyp |
|---|---|
| date | Wed, 20 Sep 2017 10:02:30 -0400 |
| parents | 2c7146311fa5 |
| children | 59505fc9e6a3 |
| files | FidoAdapter.xml readme.md |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/FidoAdapter.xml Tue Sep 05 17:55:24 2017 -0400 +++ b/FidoAdapter.xml Wed Sep 20 10:02:30 2017 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [ID Processing]--> -<tool id="FidoAdapter" name="FidoAdapter" version="2.2.0"> +<tool id="FidoAdapter" name="FidoAdapter" version="2.2.0.1"> <description>Runs the protein inference engine Fido.</description> <macros> <token name="@EXECUTABLE@">FidoAdapter</token> @@ -11,8 +11,8 @@ <expand macro="stdio"/> <expand macro="requirements"/> <command>FidoAdapter --fidocp_executable fido_choose_parameters --fido_executable fido +-fidocp_executable FidoChooseParameters +-fido_executable Fido #if $param_in: -in $param_in
--- a/readme.md Tue Sep 05 17:55:24 2017 -0400 +++ b/readme.md Wed Sep 20 10:02:30 2017 -0400 @@ -78,8 +78,8 @@ * As last step you need to change manually the binary names of all external binaries you want to use in OpenMS. For example: ``` - sed -i '13 a\-fido_executable fido' wrappers/FidoAdapter.xml - sed -i '13 a\-fidocp_executable fido_choose_parameters' wrappers/FidoAdapter.xml + sed -i '13 a\-fido_executable Fido' wrappers/FidoAdapter.xml + sed -i '13 a\-fidocp_executable FidoChooseParameters' wrappers/FidoAdapter.xml sed -i '13 a\-myrimatch_executable myrimatch' wrappers/MyriMatchAdapter.xml sed -i '13 a\-omssa_executable omssa' wrappers/OMSSAAdapter.xml sed -i '13 a\-xtandem_executable xtandem' wrappers/XTandemAdapter.xml