# HG changeset patch
# User galaxyp
# Date 1505916150 14400
# Node ID 0245664f3b6de04cc28ca410a6f575f9a28a228f
# Parent  2c7146311fa5897bf355c977a90913c4958c168a
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 26556c08813e892b4d1eed0e98012601870cae5f

diff -r 2c7146311fa5 -r 0245664f3b6d FidoAdapter.xml
--- a/FidoAdapter.xml	Tue Sep 05 17:55:24 2017 -0400
+++ b/FidoAdapter.xml	Wed Sep 20 10:02:30 2017 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
 <!--Proposed Tool Section: [ID Processing]-->
-<tool id="FidoAdapter" name="FidoAdapter" version="2.2.0">
+<tool id="FidoAdapter" name="FidoAdapter" version="2.2.0.1">
   <description>Runs the protein inference engine Fido.</description>
   <macros>
     <token name="@EXECUTABLE@">FidoAdapter</token>
@@ -11,8 +11,8 @@
   <expand macro="stdio"/>
   <expand macro="requirements"/>
   <command>FidoAdapter
--fidocp_executable fido_choose_parameters
--fido_executable fido
+-fidocp_executable FidoChooseParameters
+-fido_executable Fido
 
 #if $param_in:
   -in $param_in
diff -r 2c7146311fa5 -r 0245664f3b6d readme.md
--- a/readme.md	Tue Sep 05 17:55:24 2017 -0400
+++ b/readme.md	Wed Sep 20 10:02:30 2017 -0400
@@ -78,8 +78,8 @@
  * As last step you need to change manually the binary names of all external binaries you want to use in OpenMS. For example:
 
     ```
-    sed -i '13 a\-fido_executable fido' wrappers/FidoAdapter.xml
-    sed -i '13 a\-fidocp_executable fido_choose_parameters' wrappers/FidoAdapter.xml
+    sed -i '13 a\-fido_executable Fido' wrappers/FidoAdapter.xml
+    sed -i '13 a\-fidocp_executable FidoChooseParameters' wrappers/FidoAdapter.xml
     sed -i '13 a\-myrimatch_executable myrimatch' wrappers/MyriMatchAdapter.xml
     sed -i '13 a\-omssa_executable omssa' wrappers/OMSSAAdapter.xml
     sed -i '13 a\-xtandem_executable xtandem' wrappers/XTandemAdapter.xml