Mercurial > repos > galaxyp > mz_to_sqlite
changeset 2:8df9fe030d68 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit 2c0016faa867da59ca020587f3b704e70e16c7ca-dirty
| author | galaxyp |
|---|---|
| date | Fri, 17 Jun 2016 15:03:22 -0400 |
| parents | 77389cf7ff62 |
| children | c8bdcf574413 |
| files | mz_to_sqlite.xml tool_dependencies.xml |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/mz_to_sqlite.xml Wed Aug 05 14:19:57 2015 -0500 +++ b/mz_to_sqlite.xml Fri Jun 17 15:03:22 2016 -0400 @@ -1,7 +1,7 @@ -<tool id="mz_to_sqlite" name="mz to sqlite" version="1.0.0"> +<tool id="mz_to_sqlite" name="mz to sqlite" version="1.2.0"> <description>Extract mzIdentML and associated proteomics datasets into a SQLite DB</description> <requirements> - <requirement type="package" version="1.0.0">mztosqlite</requirement> + <requirement type="package" version="1.2.0">mztosqlite</requirement> </requirements> <stdio> <exit_code range="1:" level="fatal" description="Error Running mz_to_sqlite" /> @@ -23,7 +23,7 @@ <inputs> <param name="mzinputs" type="data" format="mzid" multiple="true" optional="true" label="Proteomics Identification files"/> <param name="scanfiles" type="data" format="mzml,mgf" multiple="true" optional="true" label="Proteomics Spectrum files"/> - <param name="searchdbs" type="data" format="fasta" multiple="true" optional="true" label="Proteomics Search Database Fasta" + <param name="searchdbs" type="data" format="fasta,uniprotxml" multiple="true" optional="true" label="Proteomics Search Database Fasta" help="These can provide sequences and length for proteins if not already present in the mzIdentML input"/> </inputs> <outputs>
--- a/tool_dependencies.xml Wed Aug 05 14:19:57 2015 -0500 +++ b/tool_dependencies.xml Fri Jun 17 15:03:22 2016 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="mztosqlite" version="1.0.0"> - <repository changeset_revision="6c82d072dbf4" name="package_mztosqlite_1_0_0" owner="galaxyp" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <package name="mztosqlite" version="1.2.0"> + <repository changeset_revision="d8db06905567" name="package_mztosqlite_1_2_0" owner="galaxyp" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>