# HG changeset patch
# User galaxyp
# Date 1466190202 14400
# Node ID 8df9fe030d687daf834f1838cca5e95149d494e8
# Parent  77389cf7ff62f168cdcecd1a9dd21938c11be370
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit 2c0016faa867da59ca020587f3b704e70e16c7ca-dirty

diff -r 77389cf7ff62 -r 8df9fe030d68 mz_to_sqlite.xml
--- a/mz_to_sqlite.xml	Wed Aug 05 14:19:57 2015 -0500
+++ b/mz_to_sqlite.xml	Fri Jun 17 15:03:22 2016 -0400
@@ -1,7 +1,7 @@
-<tool id="mz_to_sqlite" name="mz to sqlite" version="1.0.0">
+<tool id="mz_to_sqlite" name="mz to sqlite" version="1.2.0">
     <description>Extract mzIdentML and associated proteomics datasets into a SQLite DB</description>
     <requirements>
-      <requirement type="package" version="1.0.0">mztosqlite</requirement>
+      <requirement type="package" version="1.2.0">mztosqlite</requirement>
     </requirements>
    <stdio>
        <exit_code range="1:"  level="fatal" description="Error Running mz_to_sqlite" />
@@ -23,7 +23,7 @@
     <inputs>
         <param name="mzinputs" type="data" format="mzid" multiple="true" optional="true" label="Proteomics Identification files"/>
         <param name="scanfiles" type="data" format="mzml,mgf" multiple="true" optional="true" label="Proteomics Spectrum files"/>
-        <param name="searchdbs" type="data" format="fasta" multiple="true" optional="true" label="Proteomics Search Database Fasta"
+        <param name="searchdbs" type="data" format="fasta,uniprotxml" multiple="true" optional="true" label="Proteomics Search Database Fasta"
                help="These can provide sequences and length for proteins if not already present in the mzIdentML input"/>
     </inputs>
     <outputs>
diff -r 77389cf7ff62 -r 8df9fe030d68 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Aug 05 14:19:57 2015 -0500
+++ b/tool_dependencies.xml	Fri Jun 17 15:03:22 2016 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="mztosqlite" version="1.0.0">
-        <repository changeset_revision="6c82d072dbf4" name="package_mztosqlite_1_0_0" owner="galaxyp" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="mztosqlite" version="1.2.0">
+        <repository changeset_revision="d8db06905567" name="package_mztosqlite_1_2_0" owner="galaxyp" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>