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annotate msconvert_win/msconvert_win.xml @ 4:158a71ee5733 draft

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planemo upload commit b4871f9659a924a68430aed3a93f4f9bad733fd6
author galaxyp
date Wed, 07 Dec 2016 17:43:19 -0500
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1 <tool id="msconvert_win" name="msconvert (vendor support)" version="@VERSION@.0">
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2 <description>Convert and/or filter mass spectrometry files (with vendor support on Windows)</description>
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4 <macros>
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5 <import>msconvert_macros.xml</import>
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6 </macros>
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8 <expand macro="msconvertCommand" />
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10 <inputs>
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11 <!-- TODO: add Bruker, Waters, Agilent types -->
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12 <param format="mzml,mzxml,mz5,mgf,wiff,raw" name="input" type="data" label="Input unrefined MS data" />
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14 <expand macro="msconvertInputParameters" />
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15 </inputs>
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17 <expand macro="msconvertOutput" />
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19 <tests>
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20 <expand macro="msconvert_tests" />
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22 <test>
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23 <param name="input" value="small.raw" />
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24 <param name="output_type" value="mgf" />
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25 <param name="pick_peaks" value="true" />
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26 <param name="pick_peaks_algorithm" value="vendor" />
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27 <param name="pick_peaks_ms_levels" value="1" />
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28 <output name="output" file="small-peakpicking-vendor-ms1.mgf" />
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29 </test>
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31 </tests>
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32 <help>
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33 <expand macro="msconvert_help" />
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34 </help>
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35 <expand macro="citations" />
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36 </tool>