Mercurial > repos > galaxyp > msconvert
view msconvert_win/msconvert_win.xml @ 4:158a71ee5733 draft
planemo upload commit b4871f9659a924a68430aed3a93f4f9bad733fd6
author | galaxyp |
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date | Wed, 07 Dec 2016 17:43:19 -0500 |
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<tool id="msconvert_win" name="msconvert (vendor support)" version="@VERSION@.0"> <description>Convert and/or filter mass spectrometry files (with vendor support on Windows)</description> <macros> <import>msconvert_macros.xml</import> </macros> <expand macro="msconvertCommand" /> <inputs> <!-- TODO: add Bruker, Waters, Agilent types --> <param format="mzml,mzxml,mz5,mgf,wiff,raw" name="input" type="data" label="Input unrefined MS data" /> <expand macro="msconvertInputParameters" /> </inputs> <expand macro="msconvertOutput" /> <tests> <expand macro="msconvert_tests" /> <test> <param name="input" value="small.raw" /> <param name="output_type" value="mgf" /> <param name="pick_peaks" value="true" /> <param name="pick_peaks_algorithm" value="vendor" /> <param name="pick_peaks_ms_levels" value="1" /> <output name="output" file="small-peakpicking-vendor-ms1.mgf" /> </test> </tests> <help> <expand macro="msconvert_help" /> </help> <expand macro="citations" /> </tool>