changeset 12:491004b60a8c draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot
author galaxyp
date Thu, 02 Nov 2017 16:24:51 -0400
parents 8734196b040d
children bc374b8b9d76
files idpassemble.xml macros.xml test-data/201208-378803-cm-filtered.idpDB test-data/201208-378803-cm.idpDB test-data/201208-378803-cm.pep.xml test-data/201208-378803-embeddedGenesAndQuantitation.idpDB test-data/201208-378803-embeddedGenesAndSpectra.idpDB test-data/201208-378803-mm-filtered.idpDB test-data/201208-378803-mm.idpDB test-data/201208-378803-msgf-filtered.idpDB test-data/201208-378803-msgf.idpDB test-data/201208-378803.idpDB test-data/assembly.tsv test-data/input/201208-378803.mzML test-data/mapping.tsv
diffstat 6 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/idpassemble.xml	Thu Nov 02 15:08:12 2017 -0400
+++ b/idpassemble.xml	Thu Nov 02 16:24:51 2017 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="idpassemble" name="idpAssemble" version="@VERSION@.1">
+<tool id="idpassemble" name="idpAssemble" version="@VERSION@.0">
     <description>Merge IDPicker databases from single files into a merged database, and filters the result at PSM/spectrum/peptide/protein/gene levels.</description>
     <macros>
         <import>macros.xml</import>
@@ -29,11 +29,11 @@
             -SummarizeSources 1
             
             #if $AssignSourceHierarchy
-            -AssignSourceHierarchy '$AssignSourceHierarchy'
+            -AssignSourceHierarchy $AssignSourceHierarchy
             #end if
             
             #if $IsobaricSampleMapping
-            -IsobaricSampleMapping '$IsobaricSampleMapping'
+            -IsobaricSampleMapping $IsobaricSampleMapping
             #end if
             
             #if len($input) > 1
Binary file test-data/201208-378803-cm-filtered.idpDB has changed
Binary file test-data/201208-378803-mm-filtered.idpDB has changed
Binary file test-data/201208-378803-msgf-filtered.idpDB has changed
--- a/test-data/assembly.tsv	Thu Nov 02 15:08:12 2017 -0400
+++ b/test-data/assembly.tsv	Thu Nov 02 16:24:51 2017 -0400
@@ -1,1 +1,1 @@
-/Test	201208-378803
+/Test	201208-378803
--- a/test-data/mapping.tsv	Thu Nov 02 15:08:12 2017 -0400
+++ b/test-data/mapping.tsv	Thu Nov 02 16:24:51 2017 -0400
@@ -1,1 +1,1 @@
-/Test	S1,S2,S3,Reference
+/Test	S1,S2,S3,Reference