# HG changeset patch
# User galaxyp
# Date 1509654291 14400
# Node ID 491004b60a8c01bda95259121b7b745b4813f3f4
# Parent  8734196b040df0b224e7d49b6384b51f85d3c83c
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot

diff -r 8734196b040d -r 491004b60a8c idpassemble.xml
--- a/idpassemble.xml	Thu Nov 02 15:08:12 2017 -0400
+++ b/idpassemble.xml	Thu Nov 02 16:24:51 2017 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="idpassemble" name="idpAssemble" version="@VERSION@.1">
+<tool id="idpassemble" name="idpAssemble" version="@VERSION@.0">
     <description>Merge IDPicker databases from single files into a merged database, and filters the result at PSM/spectrum/peptide/protein/gene levels.</description>
     <macros>
         <import>macros.xml</import>
@@ -29,11 +29,11 @@
             -SummarizeSources 1
             
             #if $AssignSourceHierarchy
-            -AssignSourceHierarchy '$AssignSourceHierarchy'
+            -AssignSourceHierarchy $AssignSourceHierarchy
             #end if
             
             #if $IsobaricSampleMapping
-            -IsobaricSampleMapping '$IsobaricSampleMapping'
+            -IsobaricSampleMapping $IsobaricSampleMapping
             #end if
             
             #if len($input) > 1
diff -r 8734196b040d -r 491004b60a8c macros.xml
diff -r 8734196b040d -r 491004b60a8c test-data/201208-378803-cm-filtered.idpDB
Binary file test-data/201208-378803-cm-filtered.idpDB has changed
diff -r 8734196b040d -r 491004b60a8c test-data/201208-378803-cm.idpDB
diff -r 8734196b040d -r 491004b60a8c test-data/201208-378803-cm.pep.xml
diff -r 8734196b040d -r 491004b60a8c test-data/201208-378803-embeddedGenesAndQuantitation.idpDB
diff -r 8734196b040d -r 491004b60a8c test-data/201208-378803-embeddedGenesAndSpectra.idpDB
diff -r 8734196b040d -r 491004b60a8c test-data/201208-378803-mm-filtered.idpDB
Binary file test-data/201208-378803-mm-filtered.idpDB has changed
diff -r 8734196b040d -r 491004b60a8c test-data/201208-378803-mm.idpDB
diff -r 8734196b040d -r 491004b60a8c test-data/201208-378803-msgf-filtered.idpDB
Binary file test-data/201208-378803-msgf-filtered.idpDB has changed
diff -r 8734196b040d -r 491004b60a8c test-data/201208-378803-msgf.idpDB
diff -r 8734196b040d -r 491004b60a8c test-data/201208-378803.idpDB
diff -r 8734196b040d -r 491004b60a8c test-data/assembly.tsv
--- a/test-data/assembly.tsv	Thu Nov 02 15:08:12 2017 -0400
+++ b/test-data/assembly.tsv	Thu Nov 02 16:24:51 2017 -0400
@@ -1,1 +1,1 @@
-/Test	201208-378803
+/Test	201208-378803
diff -r 8734196b040d -r 491004b60a8c test-data/input/201208-378803.mzML
diff -r 8734196b040d -r 491004b60a8c test-data/mapping.tsv
--- a/test-data/mapping.tsv	Thu Nov 02 15:08:12 2017 -0400
+++ b/test-data/mapping.tsv	Thu Nov 02 16:24:51 2017 -0400
@@ -1,1 +1,1 @@
-/Test	S1,S2,S3,Reference
+/Test	S1,S2,S3,Reference