Mercurial > repos > galaxyp > data_manager_eggnog_mapper_abspath
diff data_manager/data_manager_eggnog.xml @ 1:46d2e3ed9530 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath commit fd234f7532b34a1b6ced0d3ac53a8f42348e23f7"
author | galaxyp |
---|---|
date | Fri, 19 Feb 2021 18:52:23 +0000 |
parents | 48893cfa76a8 |
children | 3d12bbd5c0ba |
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--- a/data_manager/data_manager_eggnog.xml Mon Nov 11 11:47:57 2019 -0500 +++ b/data_manager/data_manager_eggnog.xml Fri Feb 19 18:52:23 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@.1" tool_type="manage_data"> +<tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@+galaxy1" tool_type="manage_data" profile="18.09"> <description>eggnog data to a specified directory</description> <macros> <import>eggnog_macros.xml</import> @@ -10,7 +10,7 @@ @DOWNLOAD_CMD@ ]]></command> <inputs> - <param name="target_path" type="text" value="" label="Download Destination" + <param name="target_path" type="text" value="" label="Download Destination" help="Full path to where the eggnod data should be installed."> <validator type="regex" message="Must be an absolute path">^/.*$</validator> </param> @@ -18,16 +18,17 @@ </inputs> <expand macro="data_manager_outputs"/> <tests> - <expand macro="data_manager_test"/> + <expand macro="data_manager_test"> + <param name="target_path" value="/tmp" /> <!-- Not used in test mode --> + </expand> </tests> <help><![CDATA[ -This tool downloads eggnog data using download_eggnog_data.py -and populates the data tables: eggnog_mapper_db and eggnog_mapper_hmm_dbs. -The data is located at: http://eggnogdb.embl.de/download/emapperdb-4.5.1/ -The optional eggNOG HMM databases: http://eggnogdb.embl.de/download/emapperdb-4.5.1/hmmdb_levels/ +This tool downloads eggnog data using download_eggnog_data.py +and populates the data tables: eggnog_mapper_db_versioned. +The data is located at: http://eggnog5.embl.de/download/emapperdb-5.0.0/ can vary from 1G to 80G in size. -The data will be downloaded to the specified directory. This allows adding hmmdb_levels to an existing download. +The data will be downloaded to the specified directory. You should not mix eggnog data versions in the same directory. ]]></help> <expand macro="citations"/>