Mercurial > repos > galaxyp > data_manager_eggnog_mapper_abspath

comparison data_manager/data_manager_eggnog.xml @ 1:46d2e3ed9530 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath commit fd234f7532b34a1b6ced0d3ac53a8f42348e23f7"
author galaxyp
date Fri, 19 Feb 2021 18:52:23 +0000
parents 48893cfa76a8
children 3d12bbd5c0ba
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0:48893cfa76a8 1:46d2e3ed9530
1 <tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@.1" tool_type="manage_data"> 1 <tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@+galaxy1" tool_type="manage_data" profile="18.09">
2 <description>eggnog data to a specified directory</description> 2 <description>eggnog data to a specified directory</description>
3 <macros> 3 <macros>
4 <import>eggnog_macros.xml</import> 4 <import>eggnog_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
8 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
9 #set $install_path = $target_path 9 #set $install_path = $target_path
10 @DOWNLOAD_CMD@ 10 @DOWNLOAD_CMD@
11 ]]></command> 11 ]]></command>
12 <inputs> 12 <inputs>
13 <param name="target_path" type="text" value="" label="Download Destination" 13 <param name="target_path" type="text" value="" label="Download Destination"
14 help="Full path to where the eggnod data should be installed."> 14 help="Full path to where the eggnod data should be installed.">
15 <validator type="regex" message="Must be an absolute path">^/.*$</validator> 15 <validator type="regex" message="Must be an absolute path">^/.*$</validator>
16 </param> 16 </param>
17 <expand macro="data_manager_params"/> 17 <expand macro="data_manager_params"/>
18 </inputs> 18 </inputs>
19 <expand macro="data_manager_outputs"/> 19 <expand macro="data_manager_outputs"/>
20 <tests> 20 <tests>
21 <expand macro="data_manager_test"/> 21 <expand macro="data_manager_test">
22 <param name="target_path" value="/tmp" /> <!-- Not used in test mode -->
23 </expand>
22 </tests> 24 </tests>
23 <help><![CDATA[ 25 <help><![CDATA[
24 This tool downloads eggnog data using download_eggnog_data.py 26 This tool downloads eggnog data using download_eggnog_data.py
25 and populates the data tables: eggnog_mapper_db and eggnog_mapper_hmm_dbs. 27 and populates the data tables: eggnog_mapper_db_versioned.
26 The data is located at: http://eggnogdb.embl.de/download/emapperdb-4.5.1/ 28 The data is located at: http://eggnog5.embl.de/download/emapperdb-5.0.0/
27 The optional eggNOG HMM databases: http://eggnogdb.embl.de/download/emapperdb-4.5.1/hmmdb_levels/
28 can vary from 1G to 80G in size. 29 can vary from 1G to 80G in size.
29 30
30 The data will be downloaded to the specified directory. This allows adding hmmdb_levels to an existing download. 31 The data will be downloaded to the specified directory.
31 You should not mix eggnog data versions in the same directory. 32 You should not mix eggnog data versions in the same directory.
32 ]]></help> 33 ]]></help>
33 <expand macro="citations"/> 34 <expand macro="citations"/>
34 </tool> 35 </tool>