view data_manager/data_manager_eggnog.xml @ 0:48893cfa76a8 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath commit ba81f4bfe31157aa6b986e81d5e4405ae1372b3b"

<tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@.1" tool_type="manage_data">
    <description>eggnog data to a specified directory</description>
    <macros>
        <import>eggnog_macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <expand macro="version_command"/>
    <command detect_errors="exit_code"><![CDATA[
#set $install_path = $target_path
@DOWNLOAD_CMD@
    ]]></command>
    <inputs>
        <param name="target_path" type="text" value="" label="Download Destination" 
            help="Full path to where the eggnod data should be installed.">
            <validator type="regex" message="Must be an absolute path">^/.*$</validator>
        </param>
        <expand macro="data_manager_params"/>
    </inputs>
    <expand macro="data_manager_outputs"/>
    <tests>
        <expand macro="data_manager_test"/>
    </tests>
    <help><![CDATA[
This tool downloads eggnog data using download_eggnog_data.py 
and populates the data tables: eggnog_mapper_db and eggnog_mapper_hmm_dbs.
The data is located at: http://eggnogdb.embl.de/download/emapperdb-4.5.1/
The optional eggNOG HMM databases: http://eggnogdb.embl.de/download/emapperdb-4.5.1/hmmdb_levels/ 
can vary from 1G to 80G in size.

The data will be downloaded to the specified directory.  This allows adding hmmdb_levels to an existing download.  
You should not mix eggnog data versions in the same directory.
    ]]></help>
    <expand macro="citations"/>
</tool>