Mercurial > repos > galaxyp > custom_pro_db

changeset 8:fa6aa0d5a27c draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/customProDB commit 141369f97aa2804d2bbfd9ed620ea2a5574994c2-dirty
author galaxyp
date Mon, 09 May 2016 12:55:26 -0400
parents b83a4002aab1
children 328a1e3b5261
files customProDB.R
diffstat 1 files changed, 6 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/customProDB.R	Fri May 06 15:56:07 2016 -0400
+++ b/customProDB.R	Mon May 09 12:55:26 2016 -0400
@@ -41,12 +41,12 @@
 	ids_file = GalaxyInputFile(required=TRUE),
 	outputFile = GalaxyOutput("FASTA","fasta"))
 {
-    file.symlink(exon_anno_file, paste(dirname(exon_anno_file), "exon_anno.RData", sep="/"))
-    file.symlink(proteinseq_file, paste(dirname(exon_anno_file), "proseq.RData", sep="/"))
-    file.symlink(procodingseq_file, paste(dirname(exon_anno_file), "procodingseq.RData", sep="/"))
-    file.symlink(ids_file, paste(dirname(exon_anno_file), "ids.RData", sep="/"))
-    
-    bamLink = paste(dirname(bam_file), "input.bam", sep="/")
+    file.symlink(exon_anno_file, "exon_anno.RData")
+    file.symlink(proteinseq_file, "proseq.RData")
+    file.symlink(procodingseq_file, "procodingseq.RData")
+    file.symlink(ids_file, "ids.RData")
+
+    bamLink = "input.bam"
     file.symlink(bam_file, bamLink)
     file.symlink(bai_file, paste(bamLink, ".bai", sep=""))