# HG changeset patch
# User galaxyp
# Date 1462812926 14400
# Node ID fa6aa0d5a27ced0d33b31ba6fb5628d73a8513c1
# Parent  b83a4002aab12d0cf4d8215953c1361401569ed9
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/customProDB commit 141369f97aa2804d2bbfd9ed620ea2a5574994c2-dirty

diff -r b83a4002aab1 -r fa6aa0d5a27c customProDB.R
--- a/customProDB.R	Fri May 06 15:56:07 2016 -0400
+++ b/customProDB.R	Mon May 09 12:55:26 2016 -0400
@@ -41,12 +41,12 @@
 	ids_file = GalaxyInputFile(required=TRUE),
 	outputFile = GalaxyOutput("FASTA","fasta"))
 {
-    file.symlink(exon_anno_file, paste(dirname(exon_anno_file), "exon_anno.RData", sep="/"))
-    file.symlink(proteinseq_file, paste(dirname(exon_anno_file), "proseq.RData", sep="/"))
-    file.symlink(procodingseq_file, paste(dirname(exon_anno_file), "procodingseq.RData", sep="/"))
-    file.symlink(ids_file, paste(dirname(exon_anno_file), "ids.RData", sep="/"))
-    
-    bamLink = paste(dirname(bam_file), "input.bam", sep="/")
+    file.symlink(exon_anno_file, "exon_anno.RData")
+    file.symlink(proteinseq_file, "proseq.RData")
+    file.symlink(procodingseq_file, "procodingseq.RData")
+    file.symlink(ids_file, "ids.RData")
+
+    bamLink = "input.bam"
     file.symlink(bam_file, bamLink)
     file.symlink(bai_file, paste(bamLink, ".bai", sep=""))