Mercurial > repos > fubar > rgrnastar_203e
changeset 16:bab81f19eeea draft
Changed over to a separate STAR package dependency
| author | fubar |
|---|---|
| date | Tue, 04 Mar 2014 18:42:56 -0500 |
| parents | 9d72d0221c7f |
| children | bd8ddc8df8b7 |
| files | rg_rnaStar.xml tool_dependencies.xml |
| diffstat | 2 files changed, 5 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/rg_rnaStar.xml Tue Mar 04 18:40:08 2014 -0500 +++ b/rg_rnaStar.xml Tue Mar 04 18:42:56 2014 -0500 @@ -1,8 +1,9 @@ <tool id="rna_star" name="RNA-STAR" version="0.23"> <description>Gapped-read mapper for RNA-seq data</description> <requirements> - <requirement type="package" version="2.3.0e">rnastar</requirement> - <requirement type="package" version="0.1.19">samtools</requirement> + <requirement type="package" version="2.3.0e">package_rnastar</requirement> + <requirement type="package" version="0.1.19">package_samtools</requirement> + <requirement type="package" version="2.3.0e">star_230e</requirement> </requirements> <command> ##
--- a/tool_dependencies.xml Tue Mar 04 18:40:08 2014 -0500 +++ b/tool_dependencies.xml Tue Mar 04 18:42:56 2014 -0500 @@ -1,9 +1,9 @@ <?xml version="1.0"?> <tool_dependency> - <package name="rnastar" version="2.3.0e"> + <package name="package_rnastar" version="2.3.0e"> <repository changeset_revision="6dcdb10d0d8b" name="package_rnastar_230e" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> </package> - <package name="samtools" version="0.1.19"> + <package name="package_samtools" version="0.1.19"> <repository changeset_revision="54195f1d4b0f" name="package_samtools_0_1_19" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> </package> <package name="star_230e" version="2.3.0e">