Mercurial > repos > fubar > package_rnastar_230e

annotate tool_dependencies.xml @ 1:6d7b8769237e draft default tip

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author fubar
date Tue, 04 Mar 2014 23:29:37 -0500
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="rnastar" version="2.3.0e">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">https://rna-star.googlecode.com/files/STAR_2.3.0e.tgz</action>
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7 <action type="shell_command">make</action>
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8 <action type="make_directory">$INSTALL_DIR</action>
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9 <action type="make_directory">$INSTALL_DIR/bin</action>
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10 <action type="move_file">
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11 <source>STAR</source>
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12 <destination>$INSTALL_DIR/bin</destination>
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13 </action>
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14 <action type="set_environment">
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15 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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16 </action>
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17 <action type="set_environment">
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18 <environment_variable action="set_to" name="RNA_STAR_PATH">$INSTALL_DIR/bin/STAR</environment_variable>
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19 </action>
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20 </actions>
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21 </install>
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22 <readme>
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23 Installs the STAR binary for rnastar - see https://code.google.com/p/rna-star/
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24 </readme>
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25 </package>
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26 </tool_dependency>
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