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author fubar
date Tue, 04 Mar 2014 23:29:37 -0500
parents 6dcdb10d0d8b
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<?xml version="1.0"?>
<tool_dependency>
    <package name="rnastar" version="2.3.0e">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://rna-star.googlecode.com/files/STAR_2.3.0e.tgz</action>
                <action type="shell_command">make</action>
                <action type="make_directory">$INSTALL_DIR</action>
                <action type="make_directory">$INSTALL_DIR/bin</action>
                <action type="move_file">
                    <source>STAR</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
                <action type="set_environment">
                    <environment_variable action="set_to" name="RNA_STAR_PATH">$INSTALL_DIR/bin/STAR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Installs the STAR binary for rnastar - see https://code.google.com/p/rna-star/
        </readme>
    </package>
</tool_dependency>