Mercurial > repos > fubar > package_pysam_0_7_5
view tool_dependencies.xml @ 1:f8d339d91b3a draft default tip
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author | fubar |
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date | Tue, 19 Nov 2013 20:02:19 -0500 |
parents | a4e35f23093f |
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<?xml version="1.0"?> <tool_dependency> <package name="pysam" version="0.7.5"> <install version="1.0"> <actions> <action type="download_by_url">https://pysam.googlecode.com/files/pysam-0.7.5.tar.gz</action> <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python && python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> <action type="set_environment"> <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable> </action> </actions> </install> <readme> simple pysam install test from ross for htseq </readme> </package> </tool_dependency>