Mercurial > repos > fubar > package_pysam_0_7_5

comparison tool_dependencies.xml @ 1:f8d339d91b3a draft default tip

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author fubar
date Tue, 19 Nov 2013 20:02:19 -0500
parents a4e35f23093f
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0:a4e35f23093f 1:f8d339d91b3a
8 <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> 8 <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
9 <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> 9 <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
10 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> 10 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
11 <action type="set_environment"> 11 <action type="set_environment">
12 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable> 12 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
13 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
14 </action> 13 </action>
15 </actions> 14 </actions>
16 </install> 15 </install>
17 <readme> 16 <readme>
18 simple pysam install test from ross for htseq 17 simple pysam install test from ross for htseq