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annotate tool_dependencies.xml @ 1:f8d339d91b3a draft default tip

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author fubar
date Tue, 19 Nov 2013 20:02:19 -0500
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3
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4 <package name="pysam" version="0.7.5">
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5 <install version="1.0">
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6 <actions>
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7 <action type="download_by_url">https://pysam.googlecode.com/files/pysam-0.7.5.tar.gz</action>
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8 <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
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9 <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
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10 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
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11 <action type="set_environment">
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12 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
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13 </action>
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14 </actions>
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15 </install>
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16 <readme>
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17 simple pysam install test from ross for htseq
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18 </readme>
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19 </package>
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20 </tool_dependency>