Mercurial > repos > fubar > package_htseq_0_5_4
changeset 4:bb7039b4360b draft
Deleted selected files
| author | fubar |
|---|---|
| date | Thu, 06 Jun 2013 07:54:47 -0400 (2013-06-06) |
| parents | 24442a54b161 |
| children | 48d30d233a8e |
| files | package_htseq_0.5.4/tool_dependency.xml |
| diffstat | 1 files changed, 0 insertions(+), 27 deletions(-) [+] |
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--- a/package_htseq_0.5.4/tool_dependency.xml Thu Jun 06 07:53:56 2013 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,27 +0,0 @@ -<?xml version="1.0"?> -<!-- borrowed by Ross Lazarus from Lance Parson's htseq code --> -<tool_dependency> - <package name="package_htseq_0.5_4" version="0.5.4p3"> - <install version="1.0"> - <actions> - <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action> - <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> - <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> - <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python && python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> - <action type="set_environment"> - <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - <readme> - Installation of HTSeq requires Python 2.5+ (does not yet work with Python 3), and the Numpy Python package. - </readme> - </package> - <package name="package_numpy_1_7" version="1.7.1"> - <repository name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu"/> - </package> - <package name="package_matplotlib_1_2" version="1.2"> - <repository name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"/> - </package> -</tool_dependency>