# HG changeset patch
# User fubar
# Date 1370519687 14400
# Node ID bb7039b4360b5ae31f8b0957cfc0d5a35d8b58c3
# Parent  24442a54b1619544195cd7a8772b2ef158fdcbf0
Deleted selected files

diff -r 24442a54b161 -r bb7039b4360b package_htseq_0.5.4/tool_dependency.xml
--- a/package_htseq_0.5.4/tool_dependency.xml	Thu Jun 06 07:53:56 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,27 +0,0 @@
-<?xml version="1.0"?>
-<!-- borrowed by Ross Lazarus from Lance Parson's htseq code -->
-<tool_dependency>
-    <package name="package_htseq_0.5_4" version="0.5.4p3">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action>
-                <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
-                <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
-                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
-                <action type="set_environment">
-                    <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-            Installation of HTSeq requires Python 2.5+ (does not yet work with Python 3), and the Numpy Python package.
-        </readme>
-    </package>
-    <package name="package_numpy_1_7" version="1.7.1">
-        <repository name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu"/>
-    </package>
-    <package name="package_matplotlib_1_2" version="1.2">
-        <repository name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"/>
-    </package>
-</tool_dependency>