Mercurial > repos > fubar > package_htseq_0_5_4
changeset 3:24442a54b161 draft
Uploaded
| author | fubar |
|---|---|
| date | Thu, 06 Jun 2013 07:53:56 -0400 |
| parents | a4aace559c9f |
| children | bb7039b4360b |
| files | package_htseq_0.5.4/tool_dependency.xml |
| diffstat | 1 files changed, 27 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/package_htseq_0.5.4/tool_dependency.xml Thu Jun 06 07:53:56 2013 -0400 @@ -0,0 +1,27 @@ +<?xml version="1.0"?> +<!-- borrowed by Ross Lazarus from Lance Parson's htseq code --> +<tool_dependency> + <package name="package_htseq_0.5_4" version="0.5.4p3"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> + <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise --> + <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python && python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> + <action type="set_environment"> + <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> + Installation of HTSeq requires Python 2.5+ (does not yet work with Python 3), and the Numpy Python package. + </readme> + </package> + <package name="package_numpy_1_7" version="1.7.1"> + <repository name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu"/> + </package> + <package name="package_matplotlib_1_2" version="1.2"> + <repository name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"/> + </package> +</tool_dependency>