# HG changeset patch
# User fubar
# Date 1370519636 14400
# Node ID 24442a54b1619544195cd7a8772b2ef158fdcbf0
# Parent  a4aace559c9f0a844917db2532d3aa6d56720fe7
Uploaded

diff -r a4aace559c9f -r 24442a54b161 package_htseq_0.5.4/tool_dependency.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/package_htseq_0.5.4/tool_dependency.xml	Thu Jun 06 07:53:56 2013 -0400
@@ -0,0 +1,27 @@
+<?xml version="1.0"?>
+<!-- borrowed by Ross Lazarus from Lance Parson's htseq code -->
+<tool_dependency>
+    <package name="package_htseq_0.5_4" version="0.5.4p3">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
+                <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
+                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
+                <action type="set_environment">
+                    <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Installation of HTSeq requires Python 2.5+ (does not yet work with Python 3), and the Numpy Python package.
+        </readme>
+    </package>
+    <package name="package_numpy_1_7" version="1.7.1">
+        <repository name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu"/>
+    </package>
+    <package name="package_matplotlib_1_2" version="1.2">
+        <repository name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"/>
+    </package>
+</tool_dependency>