Mercurial > repos > fubar > htseq_bams_to_count_matrix

changeset 44:b71da02aa36a draft

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Uploaded
author fubar
date Thu, 21 Nov 2013 17:43:35 -0500 (2013-11-21)
parents 390cb852aae7
children 19207379d4cf
files tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Nov 21 17:39:01 2013 -0500
+++ b/tool_dependencies.xml	Thu Nov 21 17:43:35 2013 -0500
@@ -15,6 +15,8 @@
     <package name="htseq" version="0.5.4p3">
         <install version="1.0">
             <actions>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
+                <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
                 <action type="set_environment_for_install">
                         <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                             <package name="numpy" version="1.7" />
@@ -30,8 +32,6 @@
                         </repository>
                 </action>
                 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action>
-                <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
-                <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
                 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
                 <action type="set_environment">
                     <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>